rMAPS2 (v2.0.0 and later) can analyze RBP motif or CLIP peaks around all five major types of alternative splicing events (SE, MXE, A5SS, A3SS, and RI). The earlier versions can perform analyses only for one type of alternative splicing event (SE). rMAPS2 also intensively employed multi-threading to reduce the running time. In addition, by employing multi-threading, rMAPS2 has vastly improved the user experience with significant reductions in running time, going from ~8 minutes for a single SE event type to ~3.5 minutes for all 5 alternative splicing types together

   The earlier versions are completely included in rMAPS2. Users can uploaded SE event results only to simulate the earlier versions

   Yes, rMAPS2 already included two frog genomes. They are xenLae2 (Xenopus laevis: African Clawed Frog), and xenTro9 (Xenopus tropicalis).

   Yes, rMAPS team will continuously add/update more genome assemblies to the rMAPS pipeline.