rMAPS is a web server that systematically generates RNA-maps for the analysis of RNA-binding proteins (RBPs) binding sites which have position-dependent functions. Users can easily perform analysis of binding sites around differential alternative splicing events for over 100 of known RBPs. rMAPS can also analyze CLIP-seq peaks around differential alternative splicing events to generate an RNA-map of CLIP-seq experiment.
rMAPS is a computational motif enrichment analysis tool for RNA-binding proteins using RNA-seq and CLIP-seq data.
Jae Y. Hwang, Sungbo Jung, Tae L. Kook, Eric C. Rouchka, Jinwoong Bok, Juw Won Park, rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation, Nucleic Acids Research, 2020, , doi: 10.1093/nar/gkaa237
Juw Won Park, Sungbo Jung, Eric C. Rouchka, Yu-Ting Tseng, Yi Xing, rMAPS: RNA Map Analysis and Plotting Server for Alternative Exon Regulation. , Nucleic Acids Research 2016 doi: 10.1093/nar/gkw410