RNA Binding Proteins
RNA Binding Proteins (RBPs) used in rMAPS motif tool
This list was compiled from
Ray et al., Nature. 2013; 499(7457):172-7 doi: 10.1038/nature12311
Anderson et al., RNA. 2012; 18(5):1041-9 doi: 10.1261/rna.032912.112
| Ensembl Gene ID | RBP | Binding Motif | Species | Domains |
|---|---|---|---|---|
| ENSG00000115875 | 9G8/SRSF7 | [AT]GGAC[AG]A | Homo_sapiens | RRM |
| ENSG00000148584 | A1CF | [AT]TAATT[AG] | Homo_sapiens | RRM |
| ENSG00000131503 | ANKHD1 | AGACG[AT][AT] | Homo_sapiens | KH |
| ENSG00000101489 | BRUNOL4 | [GT]GTGT[GT][GT] | Homo_sapiens | RRM |
| ENSG00000161082 | BRUNOL5 | TGTGT[GT][GT] | Homo_sapiens | RRM |
| ENSG00000140488 | BRUNOL6 | TGTG[AGT][GT]G | Homo_sapiens | RRM |
| ENSG00000080802 | CNOT4 | GACAGA | Homo_sapiens | RRM |
| ENSG00000137449 | CPEB2 | C[ACT]TTTTT | Homo_sapiens | RRM |
| ENSG00000113742 | CPEB4 | TTTTTT | Homo_sapiens | RRM |
| ENSG00000071626 | DAZAP1 | TAG[GT][AT][AT][AG] | Homo_sapiens | RRM |
| ENSG00000120658 | ENOX1 | [ACT][AG][GT]ACAG | Homo_sapiens | RRM |
| ENSG00000104413 | ESRP1 | TGGTGG | Homo_sapiens | RRM |
| ENSG00000103067 | ESRP2 | TGGG[AG]A[AGT] | Homo_sapiens | RRM |
| ENSG00000102081 | FMR1 | [GT]GACA[AG]G | Homo_sapiens | KH |
| ENSG00000089280 | FUS | CGCGC | Homo_sapiens | RRM |
| ENSG00000114416 | FXR1 | A[CT]GAC[AG] | Homo_sapiens | KH |
| ENSG00000129245 | FXR2 | [AGT]GAC[AG][AG][AG] | Homo_sapiens | KH |
| ENSG00000138757 | G3BP2 | AGGAT[AGT][AG] | Homo_sapiens | RRM |
| ENSG00000135486 | HNRNPA1 | [AGT]TAGGG[AT] | Homo_sapiens | RRM |
| ENSG00000229887 | HNRNPA1L2 | [AGT]TAGGG[AT] | Homo_sapiens | RRM |
| ENSG00000122566 | HNRNPA2B1 | [AGT]TAGGG[AT] | Homo_sapiens | RRM |
| ENSG00000092199 | HNRNPC | [ACT]TTTTT[GT] | Homo_sapiens | RRM |
| ENSG00000179172 | HNRNPCL1 | [ACT]TTTTT[GT] | Homo_sapiens | RRM |
| ENSG00000126945 | HNRNPH2 | GGGAGGG | Homo_sapiens | RRM |
| ENSG00000165119 | HNRNPK | CCA[AT][AC]CC | Homo_sapiens | KH |
| ENSG00000104824 | HNRNPL | A[AC]A[CT]A[AC]A | Homo_sapiens | RRM |
| ENSG00000104824 | HNRNPL | ACAC[AG]A[ACG] | Homo_sapiens | RRM |
| ENSG00000143889 | HNRPLL | [AG]CA[ACT]ACA | Homo_sapiens | RRM |
| ENSG00000066044 | HuR | TT[AGT]TTTT | Homo_sapiens | RRM |
| ENSG00000066044 | HuR | TT[AT]GTTT | Homo_sapiens | RRM |
| ENSG00000066044 | HuR | TTT[AG][GT]TT | Homo_sapiens | RRM |
| ENSG00000066044 | HuR | TT[GT][AG]TTT | Homo_sapiens | RRM |
| ENSG00000066044 | HuR | TTTTTT[GT] | Homo_sapiens | RRM |
| ENSG00000073792 | IGF2BP2 | [ACG][AC]A[ACT][AT]CA | Homo_sapiens | KH,RRM |
| ENSG00000136231 | IGF2BP3 | A[AC]A[ACT][AT]CA | Homo_sapiens | KH,RRM |
| ENSG00000121774 | KHDRBS1 | ATAAAA[ACG] | Homo_sapiens | KH |
| ENSG00000112232 | KHDRBS2 | [AG]ATAAA[AC] | Homo_sapiens | KH |
| ENSG00000131773 | KHDRBS3 | ATAAA[ACG] | Homo_sapiens | KH |
| ENSG00000131914 | LIN28A | [ACT]GGAG[AT]A | Homo_sapiens | CSD,Znf |
| ENSG00000131914 | LIN28A | [CT]GGAGG[AG] | Homo_sapiens | CSD |
| ENSG00000015479 | MATR3 | [AC]ATCTT[AG] | Homo_sapiens | RRM |
| ENSG00000152601 | MBNL1 | GCTTGC | Homo_sapiens | Znf |
| ENSG00000135097 | MSI1 | TAGT[AT][AG]G | Homo_sapiens | RRM |
| ENSG00000135097 | MSI1 | TAG[GT][AT][AG]G | Homo_sapiens | RRM |
| ENSG00000070756 | PABPC1 | A[AG]AAAA[AC] | Homo_sapiens | RRM |
| ENSG00000151846 | PABPC3 | [AG]AAAAC[AC] | Homo_sapiens | RRM |
| ENSG00000090621 | PABPC4 | AAAAAA[AG] | Homo_sapiens | RRM |
| ENSG00000174740 | PABPC5 | AGAAA[AGT]T | Homo_sapiens | RRM |
| ENSG00000100836 | PABPN1 | A[AG]AAGA | Homo_sapiens | RRM |
| ENSG00000169564 | PCBP1 | CC[AT][AT][ACT]CC | Homo_sapiens | KH |
| ENSG00000197111 | PCBP2 | CC[CT][CT]CC[ACT] | Homo_sapiens | KH |
| ENSG00000148840 | PPRC1 | [GC][GC]GCGC[GC] | Homo_sapiens | RRM |
| ENSG00000011304 | PTB/PTBP1 | CTCT[CT][CT] | Homo_sapiens | RRM |
| ENSG00000011304 | PTBP1 | [ACT][CT]TTT[CT]T | Homo_sapiens | RRM |
| ENSG00000112531 | QKI | ACTAAC[ACG] | Homo_sapiens | KH |
| ENSG00000125970 | RALY | TTTTTT[CGT] | Homo_sapiens | RRM |
| ENSG00000078328 | RBFOX1 | [AT]GCATG[AC] | Homo_sapiens | RRM |
| ENSG00000112183 | RBM24 | [AT]G[AT]GTG[AGT] | Homo_sapiens | RRM |
| ENSG00000106344 | RBM28 | G[AT]GTAG[AGT] | Homo_sapiens | RRM |
| ENSG00000102317 | RBM3 | [AG]A[AGT]AC[GT]A | Homo_sapiens | RRM |
| ENSG00000173933 | RBM4 | GCGCG[GC][GC] | Homo_sapiens | RRM,Znf |
| ENSG00000173933 | RBM4 | GCGCG[GC]G | Homo_sapiens | RRM,Znf |
| ENSG00000089682 | RBM41 | [AT]TAC[AT]T[GT] | Homo_sapiens | RRM |
| ENSG00000126254 | RBM42 | AACTA[AC]G | Homo_sapiens | RRM |
| ENSG00000155636 | RBM45 | GACGA[AC][ACG] | Homo_sapiens | RRM |
| ENSG00000151962 | RBM46 | [AG]AT[GC]A[AT][AGT] | Homo_sapiens | RRM |
| ENSG00000163694 | RBM47 | GATGA[AT] | Homo_sapiens | RRM |
| ENSG00000003756 | RBM5 | GA[AG]GG[AT][AG] | Homo_sapiens | Znf |
| ENSG00000003756 | RBM5 | [GC]AAGG[AG]G | Homo_sapiens | RRM |
| ENSG00000004534 | RBM6 | [ACT]ATCCA[AG] | Homo_sapiens | RRM |
| ENSG00000131795 | RBM8A | [AG][CT]GCGC[CGT] | Homo_sapiens | RRM |
| ENSG00000153250 | RBMS1 | [GT]ATATA[GC] | Homo_sapiens | RRM |
| ENSG00000144642 | RBMS3 | [AC]TATA[GT][AC] | Homo_sapiens | RRM |
| ENSG00000144642 | RBMS3 | [ACT]ATATA | Homo_sapiens | RRM |
| ENSG00000020577 | SAMD4A | GC[GT]GG[ACT][AC] | Homo_sapiens | SAM |
| ENSG00000075856 | SART3 | A[AG]AAAA[AC] | Homo_sapiens | RRM |
| ENSG00000136450 | SF2/ASF | [AG]GAAGAAC | Homo_sapiens | RRM |
| ENSG00000116560 | SFPQ | [GT]T[AG][AG]T[GT][GT] | Homo_sapiens | RRM |
| ENSG00000104852 | SNRNP70 | [AG][AT]TCAAG | Homo_sapiens | RRM |
| ENSG00000077312 | SNRPA | [AT]TGCAC[AG] | Homo_sapiens | RRM |
| ENSG00000112081 | SRp20/SRSF3 | [AT]C[AT][AT]C | Homo_sapiens | RRM |
| ENSG00000112081 | SRp20/SRSF3 | CTC[GT]TC[CT] | Homo_sapiens | RRM |
| ENSG00000100650 | SRp40/SRSF5 | [CT][AG]C[AG][GT][AC] | Homo_sapiens | RRM |
| ENSG00000124193 | SRp55/SRSF6 | [CT][CT][AT]C[AT][GC]G | Homo_sapiens | RRM |
| ENSG00000136450 | SRSF1 | G[AG]AGGA | Homo_sapiens | RRM |
| ENSG00000136450 | SRSF1 | GGAGGA | Homo_sapiens | RRM |
| ENSG00000136450 | SRSF1 | GGA[GC]G[AG][ACG] | Homo_sapiens | RRM |
| ENSG00000136450 | SRSF1 | AGGA[GC][AC] | Homo_sapiens | RRM |
| ENSG00000136450 | SRSF1 | GG[AG]GGA[ACG] | Homo_sapiens | RRM |
| ENSG00000188529 | SRSF10 | AGAGA[ACG][AC] | Homo_sapiens | RRM |
| ENSG00000188529 | SRSF10 | A[AG]AG[AG][AG][AG] | Homo_sapiens | RRM |
| ENSG00000188529 | SRSF10 | AGAGA[AG][AG] | Homo_sapiens | RRM |
| ENSG00000188529 | SRSF10 | AGAGA[ACG][ACG] | Homo_sapiens | RRM |
| ENSG00000161547 | SRSF2 | GGAG[AT][AGT] | Homo_sapiens | RRM |
| ENSG00000115875 | SRSF7 | ACGACG | Homo_sapiens | RRM,Znf |
| ENSG00000111786 | SRSF9 | [GT]G[AG][AT]G[GC][AC] | Homo_sapiens | RRM |
| ENSG00000111786 | SRSF9 | A[GT]GA[ACG][AC][AG] | Homo_sapiens | RRM |
| ENSG00000120948 | TARDBP | GAATG[AGT] | Homo_sapiens | RRM |
| ENSG00000116001 | TIA1 | TTTTT[CGT][GT] | Homo_sapiens | RRM |
| ENSG00000116001 | TIA1 | [AT]TTTTT[CGT] | Homo_sapiens | RRM |
| ENSG00000136527 | Tra2-beta | GAAAGAA | Homo_sapiens | RRM |
| ENSG00000149016 | TUT1 | [AC][AG]ATACT | Homo_sapiens | RRM,Znf |
| ENSG00000063244 | U2AF2 | TTTTT[CT]C | Homo_sapiens | RRM |
| ENSG00000065978 | YBX1 | AACATC | Homo_sapiens | CSD |
| ENSG00000065978 | YBX1 | AACATC[AGT] | Homo_sapiens | CSD |
| ENSG00000006047 | YBX2 | AACA[AT]C[AGT] | Homo_sapiens | CSD |
| ENSG00000135482 | ZC3H10 | [GC][GC]AGCG[AC] | Homo_sapiens | Znf |
| ENSG00000100722 | ZC3H14 | TTT[AGT]TTT | Homo_sapiens | Znf |
| ENSG00000139168 | ZCRB1 | G[AG][ACT]TTAA | Homo_sapiens | RRM |
| ENSG00000075292 | ZNF638 | [CGT]GTT[GC][GT]T | Homo_sapiens | RRM |
| ENSMUSG00000028790 | KHDRBS1 | TAAAA[ACG][ACG] | Mus_musculus | KH |
| ENSMUSG00000051695 | PCBP1 | C[CT]TTCC | Mus_musculus | KH |
| ENSMUSG00000001120 | PCBP3 | TTT[CT]CC | Mus_musculus | KH |
| ENSMUSG00000027510 | RBM38 | [GT][GT]GTGT[GT] | Mus_musculus | RRM |