RNA Binding Proteins



RNA Binding Proteins (RBPs) used in rMAPS motif tool



This list was compiled from Ray et al., Nature. 2013; 499(7457):172-7, Anderson et al., RNA. 2012; 18(5):1041-9.


Ensembl Gene ID RBP Binding Motif Species Domains
ENSG00000115875 9G8/SRSF7 [AT]GGAC[AG]A Homo_sapiens RRM
ENSG00000148584 A1CF [AT]TAATT[AG] Homo_sapiens RRM
ENSG00000131503 ANKHD1 AGACG[AT][AT] Homo_sapiens KH
ENSG00000101489 BRUNOL4 [GT]GTGT[GT][GT] Homo_sapiens RRM
ENSG00000161082 BRUNOL5 TGTGT[GT][GT] Homo_sapiens RRM
ENSG00000140488 BRUNOL6 TGTG[AGT][GT]G Homo_sapiens RRM
ENSG00000080802 CNOT4 GACAGA Homo_sapiens RRM
ENSG00000137449 CPEB2 C[ACT]TTTTT Homo_sapiens RRM
ENSG00000113742 CPEB4 TTTTTT Homo_sapiens RRM
ENSG00000071626 DAZAP1 TAG[GT][AT][AT][AG] Homo_sapiens RRM
ENSG00000120658 ENOX1 [ACT][AG][GT]ACAG Homo_sapiens RRM
ENSG00000104413 ESRP1 TGGTGG Homo_sapiens RRM
ENSG00000103067 ESRP2 TGGG[AG]A[AGT] Homo_sapiens RRM
ENSG00000102081 FMR1 [GT]GACA[AG]G Homo_sapiens KH
ENSG00000089280 FUS CGCGC Homo_sapiens RRM
ENSG00000114416 FXR1 A[CT]GAC[AG] Homo_sapiens KH
ENSG00000129245 FXR2 [AGT]GAC[AG][AG][AG] Homo_sapiens KH
ENSG00000138757 G3BP2 AGGAT[AGT][AG] Homo_sapiens RRM
ENSG00000135486 HNRNPA1 [AGT]TAGGG[AT] Homo_sapiens RRM
ENSG00000229887 HNRNPA1L2 [AGT]TAGGG[AT] Homo_sapiens RRM
ENSG00000122566 HNRNPA2B1 [AGT]TAGGG[AT] Homo_sapiens RRM
ENSG00000092199 HNRNPC [ACT]TTTTT[GT] Homo_sapiens RRM
ENSG00000179172 HNRNPCL1 [ACT]TTTTT[GT] Homo_sapiens RRM
ENSG00000126945 HNRNPH2 GGGAGGG Homo_sapiens RRM
ENSG00000165119 HNRNPK CCA[AT][AC]CC Homo_sapiens KH
ENSG00000104824 HNRNPL A[AC]A[CT]A[AC]A Homo_sapiens RRM
ENSG00000104824 HNRNPL ACAC[AG]A[ACG] Homo_sapiens RRM
ENSG00000143889 HNRPLL [AG]CA[ACT]ACA Homo_sapiens RRM
ENSG00000066044 HuR TT[AGT]TTTT Homo_sapiens RRM
ENSG00000066044 HuR TT[AT]GTTT Homo_sapiens RRM
ENSG00000066044 HuR TTT[AG][GT]TT Homo_sapiens RRM
ENSG00000066044 HuR TT[GT][AG]TTT Homo_sapiens RRM
ENSG00000066044 HuR TTTTTT[GT] Homo_sapiens RRM
ENSG00000073792 IGF2BP2 [ACG][AC]A[ACT][AT]CA Homo_sapiens KH,RRM
ENSG00000136231 IGF2BP3 A[AC]A[ACT][AT]CA Homo_sapiens KH,RRM
ENSG00000121774 KHDRBS1 ATAAAA[ACG] Homo_sapiens KH
ENSG00000112232 KHDRBS2 [AG]ATAAA[AC] Homo_sapiens KH
ENSG00000131773 KHDRBS3 ATAAA[ACG] Homo_sapiens KH
ENSG00000131914 LIN28A [ACT]GGAG[AT]A Homo_sapiens CSD,Znf
ENSG00000131914 LIN28A [CT]GGAGG[AG] Homo_sapiens CSD
ENSG00000015479 MATR3 [AC]ATCTT[AG] Homo_sapiens RRM
ENSG00000152601 MBNL1 GCTTGC Homo_sapiens Znf
ENSG00000135097 MSI1 TAGT[AT][AG]G Homo_sapiens RRM
ENSG00000135097 MSI1 TAG[GT][AT][AG]G Homo_sapiens RRM
ENSG00000070756 PABPC1 A[AG]AAAA[AC] Homo_sapiens RRM
ENSG00000151846 PABPC3 [AG]AAAAC[AC] Homo_sapiens RRM
ENSG00000090621 PABPC4 AAAAAA[AG] Homo_sapiens RRM
ENSG00000174740 PABPC5 AGAAA[AGT]T Homo_sapiens RRM
ENSG00000100836 PABPN1 A[AG]AAGA Homo_sapiens RRM
ENSG00000169564 PCBP1 CC[AT][AT][ACT]CC Homo_sapiens KH
ENSG00000197111 PCBP2 CC[CT][CT]CC[ACT] Homo_sapiens KH
ENSG00000148840 PPRC1 [GC][GC]GCGC[GC] Homo_sapiens RRM
ENSG00000011304 PTB/PTBP1 CTCT[CT][CT] Homo_sapiens RRM
ENSG00000011304 PTBP1 [ACT][CT]TTT[CT]T Homo_sapiens RRM
ENSG00000112531 QKI ACTAAC[ACG] Homo_sapiens KH
ENSG00000125970 RALY TTTTTT[CGT] Homo_sapiens RRM
ENSG00000078328 RBFOX1 [AT]GCATG[AC] Homo_sapiens RRM
ENSG00000112183 RBM24 [AT]G[AT]GTG[AGT] Homo_sapiens RRM
ENSG00000106344 RBM28 G[AT]GTAG[AGT] Homo_sapiens RRM
ENSG00000102317 RBM3 [AG]A[AGT]AC[GT]A Homo_sapiens RRM
ENSG00000173933 RBM4 GCGCG[GC][GC] Homo_sapiens RRM,Znf
ENSG00000173933 RBM4 GCGCG[GC]G Homo_sapiens RRM,Znf
ENSG00000089682 RBM41 [AT]TAC[AT]T[GT] Homo_sapiens RRM
ENSG00000126254 RBM42 AACTA[AC]G Homo_sapiens RRM
ENSG00000155636 RBM45 GACGA[AC][ACG] Homo_sapiens RRM
ENSG00000151962 RBM46 [AG]AT[GC]A[AT][AGT] Homo_sapiens RRM
ENSG00000163694 RBM47 GATGA[AT] Homo_sapiens RRM
ENSG00000003756 RBM5 GA[AG]GG[AT][AG] Homo_sapiens Znf
ENSG00000003756 RBM5 [GC]AAGG[AG]G Homo_sapiens RRM
ENSG00000004534 RBM6 [ACT]ATCCA[AG] Homo_sapiens RRM
ENSG00000131795 RBM8A [AG][CT]GCGC[CGT] Homo_sapiens RRM
ENSG00000153250 RBMS1 [GT]ATATA[GC] Homo_sapiens RRM
ENSG00000144642 RBMS3 [AC]TATA[GT][AC] Homo_sapiens RRM
ENSG00000144642 RBMS3 [ACT]ATATA Homo_sapiens RRM
ENSG00000020577 SAMD4A GC[GT]GG[ACT][AC] Homo_sapiens SAM
ENSG00000075856 SART3 A[AG]AAAA[AC] Homo_sapiens RRM
ENSG00000136450 SF2/ASF [AG]GAAGAAC Homo_sapiens RRM
ENSG00000116560 SFPQ [GT]T[AG][AG]T[GT][GT] Homo_sapiens RRM
ENSG00000104852 SNRNP70 [AG][AT]TCAAG Homo_sapiens RRM
ENSG00000077312 SNRPA [AT]TGCAC[AG] Homo_sapiens RRM
ENSG00000112081 SRp20/SRSF3 [AT]C[AT][AT]C Homo_sapiens RRM
ENSG00000112081 SRp20/SRSF3 CTC[GT]TC[CT] Homo_sapiens RRM
ENSG00000100650 SRp40/SRSF5 [CT][AG]C[AG][GT][AC] Homo_sapiens RRM
ENSG00000124193 SRp55/SRSF6 [CT][CT][AT]C[AT][GC]G Homo_sapiens RRM
ENSG00000136450 SRSF1 G[AG]AGGA Homo_sapiens RRM
ENSG00000136450 SRSF1 GGAGGA Homo_sapiens RRM
ENSG00000136450 SRSF1 GGA[GC]G[AG][ACG] Homo_sapiens RRM
ENSG00000136450 SRSF1 AGGA[GC][AC] Homo_sapiens RRM
ENSG00000136450 SRSF1 GG[AG]GGA[ACG] Homo_sapiens RRM
ENSG00000188529 SRSF10 AGAGA[ACG][AC] Homo_sapiens RRM
ENSG00000188529 SRSF10 A[AG]AG[AG][AG][AG] Homo_sapiens RRM
ENSG00000188529 SRSF10 AGAGA[AG][AG] Homo_sapiens RRM
ENSG00000188529 SRSF10 AGAGA[ACG][ACG] Homo_sapiens RRM
ENSG00000161547 SRSF2 GGAG[AT][AGT] Homo_sapiens RRM
ENSG00000115875 SRSF7 ACGACG Homo_sapiens RRM,Znf
ENSG00000111786 SRSF9 [GT]G[AG][AT]G[GC][AC] Homo_sapiens RRM
ENSG00000111786 SRSF9 A[GT]GA[ACG][AC][AG] Homo_sapiens RRM
ENSG00000120948 TARDBP GAATG[AGT] Homo_sapiens RRM
ENSG00000116001 TIA1 TTTTT[CGT][GT] Homo_sapiens RRM
ENSG00000116001 TIA1 [AT]TTTTT[CGT] Homo_sapiens RRM
ENSG00000136527 Tra2-beta GAAAGAA Homo_sapiens RRM
ENSG00000149016 TUT1 [AC][AG]ATACT Homo_sapiens RRM,Znf
ENSG00000063244 U2AF2 TTTTT[CT]C Homo_sapiens RRM
ENSG00000065978 YBX1 AACATC Homo_sapiens CSD
ENSG00000065978 YBX1 AACATC[AGT] Homo_sapiens CSD
ENSG00000006047 YBX2 AACA[AT]C[AGT] Homo_sapiens CSD
ENSG00000135482 ZC3H10 [GC][GC]AGCG[AC] Homo_sapiens Znf
ENSG00000100722 ZC3H14 TTT[AGT]TTT Homo_sapiens Znf
ENSG00000139168 ZCRB1 G[AG][ACT]TTAA Homo_sapiens RRM
ENSG00000075292 ZNF638 [CGT]GTT[GC][GT]T Homo_sapiens RRM
ENSMUSG00000028790 KHDRBS1 TAAAA[ACG][ACG] Mus_musculus KH
ENSMUSG00000051695 PCBP1 C[CT]TTCC Mus_musculus KH
ENSMUSG00000001120 PCBP3 TTT[CT]CC Mus_musculus KH
ENSMUSG00000027510 RBM38 [GT][GT]GTGT[GT] Mus_musculus RRM